Skip to content

perf: rapid organelle hole filling for meshes and skeletons#216

Merged
william-silversmith merged 27 commits intomasterfrom
wms_fix_organelles
Oct 21, 2025
Merged

perf: rapid organelle hole filling for meshes and skeletons#216
william-silversmith merged 27 commits intomasterfrom
wms_fix_organelles

Conversation

@william-silversmith
Copy link
Contributor

@william-silversmith william-silversmith commented Oct 21, 2025

This update resolves the extremely long hole filling times it would take for cross section analysis. This uses the new fill_holes_v2 and kimimaro multipass.

@william-silversmith william-silversmith self-assigned this Oct 21, 2025
@william-silversmith william-silversmith added performance Lower memory or faster computation. CLI Command Line Interface labels Oct 21, 2025
@william-silversmith william-silversmith added images Image processing. meshes Mesh processing. skeletons Skeleton processing. labels Oct 21, 2025
@william-silversmith william-silversmith merged commit d23e701 into master Oct 21, 2025
4 checks passed
@william-silversmith william-silversmith deleted the wms_fix_organelles branch October 21, 2025 07:45
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

CLI Command Line Interface images Image processing. meshes Mesh processing. performance Lower memory or faster computation. skeletons Skeleton processing.

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant